Calculate uncertainty and biases in historic composition data
Source:R/red_noise_funcs.R
calc_comp_var.RdCalculate uncertainty and biases in historic composition data
Usage
calc_comp_var(
data_obs,
data_exp,
bins,
fleets = NULL,
years = NULL,
seasons = NULL,
merge_genders = TRUE,
genders = NULL,
merge_seasons = TRUE,
merge_fleets = FALSE
)Arguments
- data_obs
A data frame of observed composition data extracted from SS .dat file
- data_exp
A data frame of the expected composition data as estimated by an SS assessment model
- bins
A vector object including the composition bins
- fleets
A vector of the fleet numbers to analyze composition uncertainty for (Default is all fleets if NULL)
- years
A vector of the years to include when calculating composition uncertainty (Default is all years if NULL)
- seasons
A vector of the seasons to include when calculating composition uncertainty (Default is all years if NULL)
- merge_genders
TRUE/FALSE should genders be merged to calculate variance and biases (Defaults to TRUE)
- genders
A vector of the genders to analyze composition uncertainty for (Default is all genders if NULL)
- merge_seasons
TRUE/FALSE should seasons be merged to calculate variance and biases (Defaults to TRUE)
- merge_fleets
TRUE/FALSE should fleets be merged to calculate variance and biases (Defaults to FALSE)